PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001112G0650
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 172aa    MW: 18332.9 Da    PI: 10.5741
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001112G0650genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.41e-192373256
              AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+ eAa a+++a++ l+g+
  PH01001112G0650 23 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPVEAALAYDRAARTLRGA 73
                     7********.**********883....5*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.12E-292281No hitNo description
PfamPF008479.8E-132372IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-222381IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-312382IPR001471AP2/ERF domain
PROSITE profilePS5103221.9442380IPR001471AP2/ERF domain
SMARTSM003801.5E-332386IPR001471AP2/ERF domain
PRINTSPR003674.1E-102435IPR001471AP2/ERF domain
PRINTSPR003674.1E-104662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MDLTLRGATS HGGGGARGGS EAHYRGVRKR PWGRYAAEIR DPWKKTRVWL GTFDTPVEAA  60
LAYDRAARTL RGAKAKTNFP DHAHLHHHLH VPPPLPPPQQ TVPFGGIDLN FPSPWRFVYF  120
SPPAAPAPPL PPAASPVAAA PPSTALELVT GPRPGGLPFD LNEPPSLLFG S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-212380563ATERF1
3gcc_A2e-212380563ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0946500.0FP094650.1 Phyllostachys edulis cDNA clone: bphylf047i23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567200.27e-73PREDICTED: ethylene-responsive transcription factor 12-like
SwissprotQ94ID67e-32ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A0Q3GGF17e-73A0A0Q3GGF1_BRADI; Uncharacterized protein
TrEMBLI1HSG95e-73I1HSG9_BRADI; Uncharacterized protein
STRINGBRADI2G52380.11e-72(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.16e-34ERF domain protein 12